The segmentation of liver vessels is a crucial task for liver surgical planning. In selective internal radiation therapy, a catheter has to be placed into the hepatic artery, injecting radioactive beads to internally destroy tumor tissue. Based on a set of 146 abdominal CT datasets with expert segmentations, we trained three-level 3D U-Nets with loss-sensitive re-weighting. They are evaluated with respect to different measures including the Dice coefficient and the mutual skeleton coverage. The best model incorporates a masked loss for the liver area, which achieves a mean Dice coefficient of 0.56, a sensitivity of 0.69 and a precision of 0.66.
Manual detection of lymph nodes by a radiologist is time-consuming, error-prone and suffers from interobserver variability. We propose a mostly generic computer-aided detection system, which can be trained in an end-to-end fashion, to automatically detect axillary lymph nodes using state of the art fully convolutional neural networks. We aim at a system that can be easily transferred to other body regions such as the mediastinal region. Our pipeline is a two-stage approach, where first a volume of interest (VOI) (axillary region) is localized and then axillary lymph node detection is performed within the VOI. The training was done on 58 CT volumes from 36 patients comprising 300 axillary lymph nodes. On our test dataset, consisting of 75 axillary lymph nodes in the size range 5–10 mm and 17 larger than 10 mm from 30 different patients, we achieved a sensitivity of 83% with 6.7 FPs per volume on average.
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