Dr. Peter Naglic Profile

Dr. Peter Naglic

Assistant Professor at Univ of Ljubljana

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Author

Publications (31)

SPIE Journal Paper | 12 September 2024 Open Access

Experimental determination of effective light transport properties in fully anisotropic media

Ernesto Pini, Peter Naglic, Miran Bürmen, Alexander Gatto, Henrik Schäfer, Diederik Wiersma, Lorenzo Pattelli

APN, Vol. 3, Issue 05, 056017, (September 2024) https://doi.org/10.1117/12.10.1117/1.APN.3.5.056017

KEYWORDS: Scattering, Materials properties, Anisotropy, Simulations, Transmittance, Light scattering, Diffusion, Picosecond phenomena, Signal intensity, Refractive index

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Proceedings Article | 13 March 2024 Presentation

Digital holography with embedded microlasers: a preliminary study

Peter Naglič, Zuhail Kottoli, Matjaž Humar

Proceedings Volume PC12846, PC1284609 (2024) https://doi.org/10.1117/12.3001423

KEYWORDS: Digital holography, Holograms, Reconstruction algorithms, Pulsed laser operation, Microscopes, Light sources and illumination, Dyes, 3D image reconstruction, Target acquisition, Structured light

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Proceedings Article | 13 March 2024 Presentation

Massively parallel Monte Carlo simulations of light propagation in anisotropic scattering media by open-source PyXOpto engine

Peter Naglič, Ernesto Pini, Lorenzo Pattelli, Miran Bürmen

Proceedings Volume PC12856, PC1285608 (2024) https://doi.org/10.1117/12.3001838

KEYWORDS: Monte Carlo methods, Tissues, Simulations, Scattering media, Biomedical optics, Biological samples, Turbidity, Scattering, Radiative transfer, Diffuse optical imaging

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Proceedings Article | 13 March 2024 Presentation + Paper

Open-source protocol for preparation of turbid phantoms with microsphere suspensions

Ana Marin, Peter Naglič, Miran Bürmen

Proceedings Volume 12833, 1283305 (2024) https://doi.org/10.1117/12.3001626

KEYWORDS: Microspheres, Turbidity, Optical properties, Solids, Open source software, Refractive index, Polystyrene, Liquids, Scattering, Mie scattering

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Proceedings Article | 12 March 2024 Poster + Paper

Time-resolved light transport in structurally anisotropic media

Ernesto Pini, Peter Naglič, Miran Bürmen, Alexander Gatto, Henrik Schäfer, Diederik Wiersma, Lorenzo Pattelli

Proceedings Volume 12856, 1285606 (2024) https://doi.org/10.1117/12.3002766

KEYWORDS: Light scattering, Scattering, Transmittance, Diffusion, Signal intensity, Monte Carlo methods, Picosecond phenomena, Materials properties, Laser scattering, Anisotropy

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Proceedings Article | 20 May 2022 Poster + Paper

Autofocus algorithms for lensless on-chip microscopy validated on synthetic targets for microfluidic applications and particle tracking

Zan Cimperman, Peter Naglic, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Proceedings Volume 12136, 1213617 (2022) https://doi.org/10.1117/12.2621693

KEYWORDS: 3D image reconstruction, Particles, Mie scattering, Microfluidics, Reconstruction algorithms, Microscopy, Optical simulations, Holograms

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SPIE Journal Paper | 18 April 2022 Open Access

MCDataset: a public reference dataset of Monte Carlo simulated quantities for multilayered and voxelated tissues computed by massively parallel PyXOpto Python package

Miran Bürmen, Franjo Pernuš, Peter Naglič

JBO, Vol. 27, Issue 08, 083012, (April 2022) https://doi.org/10.1117/12.10.1117/1.JBO.27.8.083012

KEYWORDS: Monte Carlo methods, Computer simulations, Reflectivity, Sensors, Tissues, Transmittance, Signal to noise ratio, Optical properties, Refractive index, Multilayers

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Proceedings Article | 9 December 2021 Paper

Efficient Monte Carlo simulations of subdiffusive reflectance for spatial frequency domain imaging systems with a low NA

Yevhen Zelinskyi, Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Proceedings Volume 11920, 119201U (2021) https://doi.org/10.1117/12.2615422

KEYWORDS: Monte Carlo methods, Data modeling, Reflectivity, Optical properties, Computer simulations, Spatial frequencies, Signal to noise ratio, Sensors, Scattering, Imaging systems

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Proceedings Article | 9 December 2021 Paper

Comparison of in-vivo measured optical path length distribution of backscattered light in human skin and time-resolved Monte Carlo simulations

Miran Bürmen, Peter Naglič, Janis Spigulis

Proceedings Volume 11920, 119201V (2021) https://doi.org/10.1117/12.2615424

KEYWORDS: Monte Carlo methods, Skin, Optical fibers, Reflectivity, Tissue optics, Sensors, Absorption, Statistical modeling, Scattering, Optical testing

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Proceedings Article | 9 December 2021 Paper

pyxopto: an open-source Python library with utilities for fast light propagation modeling in turbid media

Peter Naglič, Yevhen Zelinskyi, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Proceedings Volume 11920, 1192012 (2021) https://doi.org/10.1117/12.2615340

KEYWORDS: Scattering, Light scattering, Optical fibers, Tissue optics, Biomedical optics, Radiative transfer, Optical properties, Reflectivity, Monte Carlo methods, Mie scattering

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Proceedings Article | 9 March 2020 Presentation

Simple approach to refractive index measurements of polystyrene microspheres (Conference Presentation)

Peter Naglič, Yevhen Zelinskyi, Boštjan Likar, Miran Bürmen

Proceedings Volume 11231, 112310J (2020) https://doi.org/10.1117/12.2546756

KEYWORDS: Refractive index, Optical properties, Scattering, Calibration, Light scattering, Integrating spheres, Time resolved spectroscopy, Mie scattering, Optics manufacturing, Transmittance

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Proceedings Article | 20 February 2020 Presentation + Paper

Phase functions with large domain size for improved estimation of optical properties from subdiffusive reflectance

Yevhen Zelinskyi, Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Proceedings Volume 11238, 112380T (2020) https://doi.org/10.1117/12.2546530

KEYWORDS: Reflectivity, Scattering, Optical properties, Optical fibers, Calibration, Data modeling, Light scattering, Statistical modeling, Artificial neural networks

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Proceedings Article | 11 July 2019 Paper

Efficient Monte Carlo simulations of spatially resolved reflectance for detection schemes with low numerical apertures

Yevhen Zelinskyi, Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Proceedings Volume 11074, 110741Y (2019) https://doi.org/10.1117/12.2527044

KEYWORDS: Monte Carlo methods, Reflectivity, Computer simulations, Optical properties, Scattering, Signal to noise ratio, Photon transport, Error analysis, Optical fibers, Data modeling

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Proceedings Article | 11 July 2019 Paper

Robust calibration of reflectance acquired with optical fiber probes

Peter Naglic, Boštjan Likar, Franjo Pernuš, Miran Bürmen

Proceedings Volume 11074, 1107429 (2019) https://doi.org/10.1117/12.2527134

KEYWORDS: Calibration, Mirrors, Reflectivity, Optical fibers, Optical properties, Silver, Scattering, Aluminum, Light, Monte Carlo methods

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Proceedings Article | 7 March 2019 Presentation + Paper

From Monte Carlo simulations to efficient estimation of optical properties for spatial frequency domain imaging

Peter Naglič, Yevhen Zelinskyi, Boštjan Likar, Franjo Pernuš, Miran Bürmen

Proceedings Volume 10862, 1086209 (2019) https://doi.org/10.1117/12.2510195

KEYWORDS: Reflectivity, Optical properties, Scattering, Mie scattering, Spatial frequencies, Monte Carlo methods, Computer simulations, Performance modeling, Calibration, Data modeling

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Proceedings Article | 4 March 2019 Paper

OpenCL framework for fast estimation of optical properties from spatial frequency domain images

Peter Naglič, Yevhen Zelinskyi, Boštjan Likar, Franjo Pernuš, Miran Bürmen

Proceedings Volume 10889, 1088919 (2019) https://doi.org/10.1117/12.2509986

KEYWORDS: Optical properties, Reflectivity, Scattering, Spatial frequencies, Mie scattering, Data modeling, Artificial neural networks, Graphics processing units, Absorption, Imaging spectroscopy

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Proceedings Article | 27 February 2019 Paper

Poor optical stability of molecular dyes when used as absorbers in water-based tissue-simulating phantoms

Blaž Cugmas, Peter Naglič, Sunil Paul Matthew Menachery, Franjo Pernuš, Boštjan Likar

Proceedings Volume 10870, 108700N (2019) https://doi.org/10.1117/12.2506977

KEYWORDS: Optical phantoms, Scattering media, Absorption, Ultraviolet radiation, Tissue optics, Visible radiation, Transmittance, Optical properties, Molecules, Water, Biomedical optics, Scattering

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Proceedings Article | 27 February 2019 Presentation + Paper

Fast and accurate Monte Carlo simulations of subdiffusive spatially resolved reflectance for a complex probe-sample interface

Yevhen Zelinskyi, Peter Naglic, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Proceedings Volume 10872, 108720R (2019) https://doi.org/10.1117/12.2510046

KEYWORDS: Artificial neural networks, Optical fibers, Monte Carlo methods, Computer simulations, Data modeling, Optical properties, Reflectivity, Interfaces, Scattering, Stochastic processes, Refractive index

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Proceedings Article | 19 February 2018 Paper

Portable measurement system for real-time acquisition and analysis of in-vivo spatially resolved reflectance in the subdiffusive regime

Peter Naglič, Matic Ivančič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Proceedings Volume 10486, 1048618 (2018) https://doi.org/10.1117/12.2290460

KEYWORDS: Reflectivity, Scattering, Optical fibers, Optical properties, Absorption, Tissues, Biological research, In vivo imaging, Skin, Spectrographs

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Proceedings Article | 13 February 2018 Presentation + Paper

Regression models for real-time estimation of optical and structural sample properties from subdiffusive spatially resolved reflectance

Peter Naglič, Matic Ivančič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Proceedings Volume 10492, 104920Q (2018) https://doi.org/10.1117/12.2291509

KEYWORDS: Optical properties, Data modeling, Reflectivity, Scattering, Absorption, Optical fibers, 3D modeling, Statistical analysis, Skin, Tissue optics

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Proceedings Article | 28 July 2017 Paper

Estimation of optical properties from subdiffusive reflectance beyond the second similarity parameter γ

Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Proceedings Volume 10412, 1041205 (2017) https://doi.org/10.1117/12.2286344

KEYWORDS: Optical properties, Reflectivity, Monte Carlo methods, Light scattering, Scattering

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Proceedings Article | 15 February 2017 Paper

The role of numerical aperture in efficient estimation of spatially resolved reflectance by a Monte Carlo light propagation model

Matic Ivančič, Peter Naglič, Boštjan Likar, Franjo Pernuš, Miran Bürmen

Proceedings Volume 10062, 100621B (2017) https://doi.org/10.1117/12.2252541

KEYWORDS: Monte Carlo methods, Computer simulations, Tissue optics, Optical properties, Diffuse reflectance spectroscopy, Tissues, Hyperspectral simulation, Optical fibers, Cameras, Absorption, Reflectivity, Imaging systems, Scattering, Calibration

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SPIE Journal Paper | 19 September 2016 Open Access

Estimation of optical properties by spatially resolved reflectance spectroscopy in the subdiffusive regime

Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

JBO, Vol. 21, Issue 09, 095003, (September 2016) https://doi.org/10.1117/12.10.1117/1.JBO.21.9.095003

KEYWORDS: Optical fibers, Reflectivity, Optical properties, Scattering, Data modeling, Monte Carlo methods, Reflectance spectroscopy, Absorption, Performance modeling, Tissues

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Proceedings Article | 7 March 2016 Paper

Extraction of optical properties in the sub-diffuse regime by spatially resolved reflectance spectroscopy

Peter Naglič, Blaž Cugmas, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Proceedings Volume 9706, 97061C (2016) https://doi.org/10.1117/12.2212947

KEYWORDS: Monte Carlo methods, Tissues, Reflectivity, Optical properties, Reflectance spectroscopy, Scattering, Optical fibers, Absorption, Biomedical optics, Photon transport, Data modeling, Performance modeling, Error analysis

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Proceedings Article | 7 March 2016 Presentation + Paper

Extraction of optical properties from hyperspectral images by Monte Carlo light propagation model

Matic Ivančič, Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Proceedings Volume 9706, 97061A (2016) https://doi.org/10.1117/12.2212807

KEYWORDS: Hyperspectral imaging, Monte Carlo methods, Optical properties, Scattering, Calibration, Tissues, Absorption, Light scattering, Imaging systems, Tissue optics

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SPIE Journal Paper | 18 December 2015 Open Access

Properties of contact pressure induced by manually operated fiber-optic probes

Maksimilijan Bregar, Blaž Cugmas, Peter Naglic, Daniela Hartmann, Franjo Pernuš, Boštjan Likar, Miran Bürmen

JBO, Vol. 20, Issue 12, 127002, (December 2015) https://doi.org/10.1117/12.10.1117/1.JBO.20.12.127002

KEYWORDS: Skin, Silicon, Tissues, Diffuse reflectance spectroscopy, Fiber optics, In vivo imaging, Tissue optics, Bone, Statistical analysis, Biomedical optics

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Proceedings Article | 15 July 2015 Paper

Comparison of the simplified laterally uniform and geometrically realistic optical fiber probe-tissue interface in terms of Monte Carlo simulated diffuse reflectance

Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Proceedings Volume 9537, 95370R (2015) https://doi.org/10.1117/12.2183867

KEYWORDS: Optical fibers, Monte Carlo methods, Interfaces, Diffuse reflectance spectroscopy, Scattering, Absorption, Tissue optics, Geometrical optics, Optical properties, Tissues

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Proceedings Article | 10 March 2015 Paper

Accuracy of experimental data and Monte Carlo simulation lookup table-based inverse models for assessment of turbid media optical properties with diffuse reflectance spectroscopy

Peter Naglič, Maksimilijan Bregar, Franjo Pernuš, Boštjan Likar, Miran Bürmen

Proceedings Volume 9333, 933310 (2015) https://doi.org/10.1117/12.2078257

KEYWORDS: Monte Carlo methods, Diffuse reflectance spectroscopy, Scattering, Optical properties, Data modeling, Absorption, Fiber optics, Performance modeling, Error analysis, Calibration

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SPIE Journal Paper | 9 March 2015 Open Access

Detection of canine skin and subcutaneous tumors by visible and near-infrared diffuse reflectance spectroscopy

Blaž Cugmas, Tanja Plavec, Maksimilijan Bregar, Peter Naglič, Franjo Pernuš, Boštjan Likar, Miran Bürmen

JBO, Vol. 20, Issue 03, 037003, (March 2015) https://doi.org/10.1117/12.10.1117/1.JBO.20.3.037003

KEYWORDS: Tumors, Skin, Near infrared, Scattering, In vivo imaging, Diffuse reflectance spectroscopy, Tissues, Visible radiation, Absorption, Optical properties

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Proceedings Article | 4 March 2014 Paper

Combining the diffusion approximation and Monte Carlo modeling in analysis of diffuse reflectance spectra from human skin

Peter Naglič, Luka Vidovič, Matija Milanič, Lise Randeberg, Boris Majaron

Proceedings Volume 8926, 89260U (2014) https://doi.org/10.1117/12.2035747

KEYWORDS: Skin, Monte Carlo methods, Diffuse reflectance spectroscopy, Tissues, Blood, Scattering, Diffusion, Computer simulations, Absorption, Biological research

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Proceedings Article | 18 November 2013 Paper

Applicability of diffusion approximation in analysis of diffuse reflectance spectra from healthy human skin

Peter Naglič, Luka Vidovič, Matija Milanič, Lise Randeberg, Boris Majaron

Proceedings Volume 9032, 90320N (2013) https://doi.org/10.1117/12.2044706

KEYWORDS: Skin, Monte Carlo methods, Diffuse reflectance spectroscopy, Blood, Diffusion, Tissues, Scattering, Tissue optics, Chromophores, Absorption

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Showing 5 of 31 publications

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