Machine learning and computer vision methods are showing good performance in medical imagery analysis. Yet only a few applications are now in clinical use and one of the reasons for that is poor transferability of the models to data from different sources or acquisition domains. Development of new methods and algorithms for the transfer of training and adaptation of the domain in multi-modal medical imaging data is crucial for the development of accurate models and their use in clinics. In present work, we overview methods used to tackle the domain shift problem in machine learning and computer vision. The algorithms discussed in this survey include advanced data processing, model architecture enhancing and featured training, as well as predicting in domain invariant latent space. The application of the autoencoding neural networks and their domain-invariant variations are heavily discussed in a survey. We observe the latest methods applied to the magnetic resonance imaging (MRI) data analysis and conclude on their performance as well as propose directions for further research.
ABIDE is the largest open-source autism spectrum disorder database with both fMRI data and full phenotype description. These data were extensively studied based on functional connectivity analysis as well as with deep learning on raw data, with top models accuracy close to 75% for separate scanning sites. Yet there is still a problem of models transferability between different scanning sites within ABIDE. In the current paper, we for the first time perform domain adaptation for brain pathology classification problem on raw neuroimaging data. We use 3D convolutional autoencoders to build the domain irrelevant latent space image representation and demonstrate this method to outperform existing approaches on ABIDE data.
The paper will provide examples of computer vision tasks in which topological data analysis gave new effective solutions. Ideas underlying topological data analysis and its basic methods will be briefly described and illustrated with examples of computer vision problems. No prior knowledge in topological data analysis and computational geometry is assumed, a brief introduction to subject is given throughout the text.
In the present work, we introduce a data processing and analysis pipeline, which ensures the reproducibility of machine learning models chosen for MR image recognition. The proposed pipeline is applied to solve the binary classification problems: epilepsy and depression diagnostics based on vectorized features from MR images. This model is then assessed in terms of classification performance, robustness and reliability of the results, including predictive accuracy on unseen data. The classification performance achieved with our approach compares favorably to ones reported in the literature, where usually no thorough model evaluation is performed.
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